ChangeLog¶
v1.3.0 (2021-01-21)¶
Use pthread for concurrent scanning (significant speed improvement)
Optimize for memory usage
Support for multiple rounds sampling to calculate score cutoffs
Add matrix id in output files
Bug fixes and other performance improvements
v1.2.2 (2020-05-24)¶
Replace new special characters ‘/’ and ‘*’ to ‘_’ for motif names
Better type definition in score.C
v1.2.1 (2020-05-18)¶
Fix a variable definition in C loop (C99)
v1.2.0 (2020-05-05)¶
Brand-new MotifScan package for Python version 3.6+.
Use a config module to manage the genome and motif data paths.
Download genome assembly from UCSC and motif sets from JASPAR2020.
Support multiple input formats (BED, MACS, MACS2, narrowPeak etc.).
Enable to run multiple processes when scanning motifs.
Speed up calculating motif scores with a C extension.
Bug fixes and performance improvements.